# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "DEXSeq" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'DEXSeq: Inference of differential exon usage in RNA-Seq'
version: 1.57.2
doi: 10.1101/gr.133744.111
identifiers:
- type: doi
  value: 10.32614/CRAN.package.DEXSeq
abstract: The package is focused on finding differential exon usage using RNA-seq
  exon counts between samples with different experimental designs. It provides functions
  that allows the user to make the necessary statistical tests based on a model that
  uses the negative binomial distribution to estimate the variance between biological
  replicates and generalized linear models for testing. The package also provides
  functions for the visualization and exploration of the results.
authors:
- family-names: Anders
  given-names: Simon
  email: sanders@fs.tum.de
- family-names: Reyes
  given-names: Alejandro
  email: alejandro.reyes.ds@gmail.com
- family-names: Gruson
  given-names: Hugo
  email: hugo.gruson@embl.de
preferred-citation:
  type: article
  title: Detecting differential usage of exons from RNA-seq data.
  authors:
  - family-names: Anders
    given-names: Simon
    email: sanders@fs.tum.de
  - family-names: Reyes
    given-names: Alejandro
    email: alejandro.reyes.ds@gmail.com
  - family-names: Huber
    given-names: Wolfgang
  year: '2012'
  journal: Genome Research
  volume: '22'
  doi: 10.1101/gr.133744.111
  start: '2008'
  end: '2017'
repository: https://huber-group-embl.r-universe.dev
commit: c7c794955720be76af41a7c50e105ad59048fc79
date-released: '2026-04-12'
contact:
- family-names: Gruson
  given-names: Hugo
  email: hugo.gruson@embl.de
references:
- type: article
  title: Drift and conservation of differential exon usage across tissues in primate
    species.
  authors:
  - family-names: Reyes
    given-names: Alejandro
  - family-names: Anders
    given-names: Simon
  - family-names: Weatheritt
    given-names: Robert
  - family-names: Gibson
    given-names: Toby
  - family-names: Steinmetz
    given-names: Lars
  - family-names: Huber
    given-names: Wolfgang
  year: '2013'
  journal: PNAS
  volume: '110'
  doi: 10.1073/pnas.1307202110
  start: 15377-15382