Package: HD2013SGI
Type: Package
Title: Mapping genetic interactions in human cancer cells with RNAi and
        multiparametric phenotyping
Version: 1.53.2
Authors@R: 
  c(
    person(given = "Bernd", family = "Fischer", role = "aut"),
    person(given = "Hugo", family = "Gruson", email = "hugo.gruson@embl.de", role = "cre")
  )
Description: This package contains the experimental data and a complete
        executable transcript (vignette) of the analysis of the HCT116
        genetic interaction matrix presented in the paper "Mapping
        genetic interactions in human cancer cells with RNAi and
        multiparametric phenotyping" by C. Laufer, B. Fischer, M.
        Billmann, W. Huber, M. Boutros; Nature Methods (2013)
        10:427-31. doi: 10.1038/nmeth.2436.
License: Artistic-2.0
Depends: R (>= 4.1.0), gplots, geneplotter, splots, limma, vcd,
        LSD,EBImage,httr2
Imports: grDevices
Suggests: BiocStyle
SystemRequirements: GNU make
biocViews: ExperimentData, CancerData, ColonCancerData,
        MicrotitrePlateAssayData, CellCulture, Homo_sapiens_Data,
        HighThroughputImagingData
BuildResaveData: no
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake libfftw3-dev make libjpeg-dev libpng-dev
        libtiff-dev libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://huber-group-embl.r-universe.dev
Date/Publication: 2026-08-20 12:01:04 UTC
RemoteUrl: https://github.com/Huber-group-EMBL/HD2013SGI
RemoteRef: HEAD
RemoteSha: 8f64c179a4f236b8474dd11237809d22c133d654
NeedsCompilation: no
Packaged: 2026-10-19 09:17:02 UTC; root
Author: Bernd Fischer [aut],
  Hugo Gruson [cre]
Maintainer: Hugo Gruson <hugo.gruson@embl.de>