Demo

(Online version of the book)[https://www.huber.embl.de//msmb]

library("MSMB")

## Loading required package: tibble

dir(system.file("extdata", package = "MSMB"))

##  [1] "01126211_NB8_I025.fcs"  "01247181_NB06_I025.fcs" "02276161_NB8_I025.fcs" 
##  [4] "03157141_NB06_I025.fcs" "05107251_NB06_I025.fcs" "06226101_NB8_I025.fcs" 
##  [7] "07115141_NB8_I025.fcs"  "07215281_NB8_I025.fcs"  "08045071_NB8_I025.fcs" 
## [10] "09225121_NB8_I025.fcs"  "10175181_NB8_I025.fcs"  "10276181_NB8_I025.fcs" 
## [13] "11145351_NB8_I025.fcs"  "12015151_NB8_I025.fcs"  "annotation.txt"        
## [16] "PaintedTurtles.txt"     "statecancerdeaths.csv"

dir(system.file("images", package = "MSMB"))

## [1] "hiv.png"        "image-Cy3.tif"  "image-DAPI.tif" "image-FITC.tif"
## [5] "mosquito.png"

dir(system.file("data", package = "MSMB"))

## [1] "brcalymphnode.RData"  "ukraine_coords.RData" "ukraine_dists.RData"

dir(system.file("scripts", package = "MSMB"))

## [1] "ukraine-dists.R"

Session Info

sessionInfo()

## R version 4.6.0 (2026-04-24)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: Etc/UTC
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] MSMB_1.31.0      tibble_3.3.1     BiocStyle_2.41.0
## 
## loaded via a namespace (and not attached):
##  [1] vctrs_0.7.3         cli_3.6.6           knitr_1.51         
##  [4] rlang_1.2.0         xfun_0.58           jsonlite_2.0.0     
##  [7] glue_1.8.1          buildtools_1.0.0    htmltools_0.5.9    
## [10] maketools_1.3.2     sys_3.4.3           sass_0.4.10        
## [13] rmarkdown_2.31      evaluate_1.0.5      jquerylib_0.1.4    
## [16] fastmap_1.2.0       yaml_2.3.12         lifecycle_1.0.5    
## [19] BiocManager_1.30.27 compiler_4.6.0      pkgconfig_2.0.3    
## [22] digest_0.6.39       R6_2.6.1            pillar_1.11.1      
## [25] magrittr_2.0.5      bslib_0.11.0        tools_4.6.0        
## [28] cachem_1.1.0