This package is considered a duplicate. The official version of this package is found at:https://bioc.r-universe.dev/ZarrArray

Package: ZarrArray 1.1.3

Hervé Pagès

ZarrArray: Bring Zarr datasets in R as DelayedArray objects

The ZarrArray package leverages the Rarr package to bring Zarr datasets in R as DelayedArray objects. The main class in the package is the ZarrArray class. A ZarrArray object is an array-like object that represents a Zarr dataset in R. ZarrArray objects are DelayedArray derivatives and therefore support all operations (delayed or block-processed) supported by DelayedArray objects.

Authors:Hervé Pagès [aut, cre], Mike Smith [aut], Hugo Gruson [aut], Artür Manukyan [aut], Levi Waldron [fnd]

ZarrArray_1.1.3.tar.gz
ZarrArray_1.1.3.zip(r-4.7)ZarrArray_1.1.3.zip(r-4.6)ZarrArray_1.1.3.zip(r-4.5)
ZarrArray_1.1.3.tgz(r-4.6-any)ZarrArray_1.1.3.tgz(r-4.5-any)
ZarrArray_1.1.3.tar.gz(r-4.7-any)ZarrArray_1.1.3.tar.gz(r-4.6-any)
ZarrArray_1.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ZarrArray/json (API)

# Install 'ZarrArray' in R:

install.packages('ZarrArray', repos = c('https://huber-group-embl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/zarrarray/issues

On BioConductor:ZarrArray-1.1.2(bioc 3.24)ZarrArray-1.0.0(bioc 3.23)

infrastructure datarepresentation dataimport bioconductor-package core-package u24ca289073

7.01 score 5 stars 5 packages 7 scripts 29 exports 38 dependencies

Last updated from:092c417853. Checks:7 WARNING, 2 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	WARNING	211
source / vignettes	OK	244
linux-release-x86_64	WARNING	238
macos-release-arm64	WARNING	149
macos-oldrel-arm64	WARNING	137
windows-devel	WARNING	211
windows-release	WARNING	196
windows-oldrel	WARNING	180
wasm-release	OK	138

Exports:chunkdim coerce DelayedArray extract_array extract_sparse_array get_writeZarrArray_auto_chunkdim get_writeZarrArray_auto_path get_writeZarrArray_chunk_maxlen get_writeZarrArray_chunk_shape get_writeZarrArray_dump_dir is_sparse matrixClass nzcount path set_writeZarrArray_chunk_maxlen set_writeZarrArray_chunk_shape set_writeZarrArray_dump_dir show t t.CSC_ZarrSparseMatrixSeed t.CSR_ZarrSparseMatrixSeed type write_block writeZarrArray ZarrArray ZarrArraySeed ZarrRealizationSink ZarrSparseMatrix ZarrSparseMatrixSeed

Dependencies:abind askpass base64enc BiocGenerics cli curl DelayedArray digest generics glue grumpy httr2 IRanges jsonlite lattice lifecycle magrittr Matrix MatrixGenerics matrixStats openssl paws.common paws.storage R.methodsS3 R.oo R.utils R6 Rarr Rcpp rlang S4Arrays S4Vectors SparseArray sys vctrs withr xml2 XVector

ZarrArray overview

Rendered fromZarrArray_overview.Rmdusingknitr::rmarkdown

Last update: 2026-04-04
Started: 2026-01-28

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Write an array-like object to disk in Zarr format	chunkdim,ZarrRealizationSink-method class:ZarrRealizationSink coerce,ANY,ZarrArray-method coerce,DelayedArray,ZarrArray-method coerce,DelayedMatrix,ZarrMatrix-method coerce,ZarrRealizationSink,DelayedArray-method coerce,ZarrRealizationSink,ZarrArray-method coerce,ZarrRealizationSink,ZarrArraySeed-method type,ZarrRealizationSink-method writeZarrArray write_block,ZarrRealizationSink-method ZarrRealizationSink ZarrRealizationSink-class
Control writeZarrArray's automatic argument values	get_writeZarrArray_auto_chunkdim get_writeZarrArray_auto_path get_writeZarrArray_chunk_maxlen get_writeZarrArray_chunk_shape get_writeZarrArray_dump_dir set_writeZarrArray_chunk_maxlen set_writeZarrArray_chunk_shape set_writeZarrArray_dump_dir writeZarrArray-auto-args writeZarrArray_auto_args
Zarr datasets as DelayedArray objects	class:ZarrArray class:ZarrMatrix coerce,ZarrArray,ZarrMatrix-method coerce,ZarrMatrix,ZarrArray-method DelayedArray,ZarrArraySeed-method matrixClass,ZarrArray-method ZarrArray ZarrArray-class ZarrMatrix ZarrMatrix-class
ZarrArraySeed objects	chunkdim,ZarrArraySeed-method class:ZarrArraySeed dim,ZarrArraySeed-method extract_array,ZarrArraySeed-method path,ZarrArraySeed-method show,ZarrArraySeed-method type,ZarrArraySeed-method ZarrArraySeed ZarrArraySeed-class
HDF5 sparse matrices as DelayedMatrix objects	class:ZarrSparseMatrix DelayedArray,ZarrSparseMatrixSeed-method nzcount,ZarrSparseMatrix-method ZarrSparseMatrix ZarrSparseMatrix-class
ZarrSparseMatrixSeed objects	chunkdim,CSC_ZarrSparseMatrixSeed-method chunkdim,CSR_ZarrSparseMatrixSeed-method class:CSC_ZarrSparseMatrixSeed class:CSR_ZarrSparseMatrixSeed class:ZarrSparseMatrixSeed CSC_ZarrSparseMatrixSeed CSC_ZarrSparseMatrixSeed-class CSR_ZarrSparseMatrixSeed CSR_ZarrSparseMatrixSeed-class dim,ZarrSparseMatrixSeed-method dimnames,ZarrSparseMatrixSeed-method extract_array,ZarrSparseMatrixSeed-method extract_sparse_array,CSC_ZarrSparseMatrixSeed-method extract_sparse_array,CSR_ZarrSparseMatrixSeed-method is_sparse,ZarrSparseMatrixSeed-method nzcount,ZarrSparseMatrixSeed-method path,ZarrSparseMatrixSeed-method show,ZarrSparseMatrixSeed-method t,CSC_ZarrSparseMatrixSeed-method t,CSR_ZarrSparseMatrixSeed-method t.CSC_ZarrSparseMatrixSeed t.CSR_ZarrSparseMatrixSeed ZarrSparseMatrixSeed ZarrSparseMatrixSeed-class