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The covariate can be any\ncontinuous-valued or categorical variable that is thought to be\ninformative on the statistical properties of each hypothesis\ntest, while it is independent of the p-value under the null\nhypothesis.", "License": "Artistic-2.0", "VignetteBuilder": "knitr", "biocViews": "ImmunoOncology, MultipleComparison, RNASeq", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "coinor-symphony coinor-libsymphony-dev", "Repository": "https://huber-group-embl.r-universe.dev", "Date/Publication": "2023-04-25 14:43:54 UTC", "RemoteUrl": "https://github.com/nignatiadis/IHW", "RemoteRef": "HEAD", "RemoteSha": "2da27aa7d23c399be0e5f8ae33aa1b61aeacc389", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-18 09:01:45 UTC", "User": "root" }, "Author": "Nikos Ignatiadis [aut, cre],\nWolfgang Huber [aut]", "Maintainer": "Nikos Ignatiadis ", "_user": "huber-group-embl", "_type": "src", "_file": "IHW_1.29.0.tar.gz", "_fileid": "https://r2.ropensci.org/d68fec9a2179e212677d6c5ba8fe86156d88cdb002e0236c1537575ada1ff58b", "_filesize": 3901456, "_sha256": "d68fec9a2179e212677d6c5ba8fe86156d88cdb002e0236c1537575ada1ff58b", "_expires": "2027-01-26T09:06:29.000Z", "_created": "2026-10-18T09:01:45.000Z", "_published": "2026-10-18T09:06:31.273Z", "_buildurl": "https://github.com/r-universe/huber-group-embl/actions/runs/39113418245", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117635134279, "time": 162, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12132065657" }, { "job": 117635134231, "time": 179, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12131846612" }, { "job": 117635134267, "time": 122, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "12131661152" }, { "job": 117635134223, "time": 130, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12131328276" }, { "job": 117634225011, "time": 282, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12131725841" }, { "job": 117635134200, "time": 127, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12132010806" }, { "job": 117635134235, "time": 247, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "12131522783" }, { "job": 117635134307, "time": 121, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "12130898591" }, { "job": 117635134241, "time": 171, "config": "windows-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "12131901482" } ], "_upstream": "https://github.com/nignatiadis/IHW", "_commit": { "id": "2da27aa7d23c399be0e5f8ae33aa1b61aeacc389", "author": "J Wokaty ", "committer": "J Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_17 branch\n", "time": 1682433834 }, "_maintainer": { "name": "Nikos Ignatiadis", "email": "nikos.ignatiadis01@gmail.com", "login": "nignatiadis", "description": "Statistician", "uuid": 2933625 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3.0", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "slam", "role": "Imports" }, { "package": "lpsymphony", "role": "Imports" }, { "package": "fdrtool", "role": "Imports" }, { "package": "BiocGenerics", "role": "Imports" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "gridExtra", "role": "Suggests" }, { "package": "scales", "role": "Suggests" }, { "package": "DESeq2", "role": "Suggests" }, { "package": "airway", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "Matrix", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" } ], "_owner": "nignatiadis", "_selfowned": false, "_usedby": 3, "_updates": [], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.41.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.40.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "immunooncology", "multiplecomparison", "rnaseq", "ihw", "pvalue-adjustment" ], "_stars": 17, "_contributors": [ { "user": "nignatiadis", "count": 18, "uuid": 2933625 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "dtenenba", "count": 4, "uuid": 2286826 }, { "user": "jwokaty", "count": 4, "uuid": 1744257 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "kayla-morrell", "count": 1, "uuid": 32339524 }, { "user": "link-ny", "count": 1, "uuid": 4392950 } ], "_userbio": { "uuid": 57364287, "type": "organization", "name": "EMBL Huber Group", "followers": 21, "description": "Repository for joint projects by members and ex-members of the Huber group at EMBL. 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weights", "Decision boundary", "Raw versus adjusted p-values", "FWER control with IHW", "Other data types, and how to choose the covariate", "Criteria for choosing a covariate", "Examples", "Why are the different covariate criteria necessary?", "Diagnostic plots for the covariate", "Scatter plots", "Stratified p-value histograms", "Further reading about appropriate covariates", "Advanced usage: Working with incomplete p-value lists", "References" ], "created": "2016-01-31 16:28:33", "modified": "2016-10-03 22:01:49", "commits": 15 } ], "_score": 8.433767434501211, "_indexed": false, "_nocasepkg": "ihw", "_universes": [ "huber-group-embl" ], "_indexurl": "https://bioc.r-universe.dev/IHW", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.29.0", "date": "2026-10-18T09:04:17.000Z", "distro": "resolute", "commit": "2da27aa7d23c399be0e5f8ae33aa1b61aeacc389", "fileid": "https://r2.ropensci.org/043a5d61f40451ccd0e2ce117901f4c15f0796e2f960e45f85d5ffe2498790d6", "status": "success", 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