{ "_id": "6ab54641c18b73ce90b4fa71", "Package": "biomaRt", "Title": "Interface to BioMart databases (i.e. Ensembl)", "Version": "2.69.4", "Authors@R": "c(\nperson(\"Steffen\", \"Durinck\", , \"biomartdev@gmail.com\", role = \"aut\"),\nperson(\"Wolfgang\", \"Huber\", role = \"aut\"),\nperson(\"Sean\", \"Davis\", , \"sdavis2@mail.nih.gov\", role = \"ctb\"),\nperson(\"Francois\", \"Pepin\", role = \"ctb\"),\nperson(\"Vince S\", \"Buffalo\", role = \"ctb\"),\nperson(\"Mike\", \"Smith\", , \"grimbough@gmail.com\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-7800-3848\")),\nperson(\"Hugo\", \"Gruson\", , \"hugo.gruson@embl.de\", role = c(\"ctb\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-4094-1476\")),\nperson(\"German Network for Bioinformatics Infrastructure - de.NBI\", role = \"fnd\")\n)", "Description": "In recent years a wealth of biological data has become\navailable in public data repositories. Easy access to these\nvaluable data resources and firm integration with data analysis\nis needed for comprehensive bioinformatics data analysis.\nbiomaRt provides an interface to a growing collection of\ndatabases implementing the BioMart software suite\n(). The\npackage enables retrieval of large amounts of data in a uniform\nway without the need to know the underlying database schemas or\nwrite complex SQL queries. The most prominent examples of\nBioMart databases are maintained by Ensembl, which provides\nbiomaRt users direct access to a diverse set of data and\nenables a wide range of powerful online queries from gene\nannotation to database mining.", "License": "Artistic-2.0", "URL": "https://github.com/Huber-group-EMBL/biomaRt,\nhttps://huber-group-embl.github.io/biomaRt/", "BugReports": "https://github.com/Huber-group-EMBL/biomaRt/issues", "VignetteBuilder": "knitr", "biocViews": "Annotation", "Config/Needs/website": "xfun", "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyLoad": "yes", "NeedsCompilation": "no", "Roxygen": "list(markdown = TRUE)", "Config/roxygen2/version": "8.1.0.9000", "Config/pak/sysreqs": "libicu-dev libpng-dev libxml2-dev libssl-dev\nzlib1g-dev", "Repository": "https://huber-group-embl.r-universe.dev", "Date/Publication": "2026-09-24 13:05:20 UTC", "RemoteUrl": "https://github.com/Huber-group-EMBL/biomaRt", "RemoteRef": "HEAD", "RemoteSha": "3e1a0768933f6c3e00895e02119e4f6e36050dac", "Packaged": { "Date": "2026-09-24 15:30:08 UTC", "User": "root" }, "Author": "Steffen Durinck [aut],\nWolfgang Huber [aut],\nSean Davis [ctb],\nFrancois Pepin [ctb],\nVince S Buffalo [ctb],\nMike Smith [ctb] (ORCID: ),\nHugo Gruson [ctb, cre] (ORCID: ),\nGerman Network for Bioinformatics Infrastructure - de.NBI [fnd]", "Maintainer": "Hugo Gruson ", "_user": "huber-group-embl", "_type": "src", "_file": "biomaRt_2.69.4.tar.gz", "_fileid": "https://r2.ropensci.org/37d1367990c855772b07e76ef98e6b07d756fae7204e6317b69f40b9c6d9e052", "_filesize": 545461, "_sha256": "37d1367990c855772b07e76ef98e6b07d756fae7204e6317b69f40b9c6d9e052", "_expires": "2027-01-02T15:48:15.000Z", "_created": "2026-09-24T15:30:08.000Z", "_published": "2026-09-24T15:48:17.782Z", "_jobs": [ { "job": 107704610546, "time": 273, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "10817086039" }, { "job": 107704610518, "time": 210, "config": "linux-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "10816921464" }, { "job": 107704610549, "time": 372, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "10818020358" }, { "job": 107704610525, "time": 153, "config": "macos-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "10817810821" }, { "job": 107702427946, "time": 308, "config": "source", "r": "4.6.1", "check": "ERROR", "artifact": "10816238102" }, { "job": 107704610415, "time": 149, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10816283558" }, { "job": 107704610783, "time": 229, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "10817275383" }, { "job": 107704610740, "time": 294, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "10817205545" }, { "job": 107704610507, "time": 209, "config": "windows-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "10816263804" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/huber-group-embl/actions/runs/36020036759", "_status": "failure", "_upstream": "https://github.com/Huber-group-EMBL/biomaRt", "_commit": { "id": "3e1a0768933f6c3e00895e02119e4f6e36050dac", "author": "Hugo Gruson ", "committer": "Hugo Gruson ", "message": "Add link to de.NBI survey\n", "time": 1790255120 }, "_maintainer": { "name": "Hugo Gruson", "email": "hugo.gruson@embl.de", "login": "bisaloo", "mastodon": "@grusonh@mastodon.social", "orcid": "0000-0002-4094-1476", "description": "Evolutionary Biologist turned Research Software Engineer in R.", "uuid": 10783929 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "methods", "role": "Depends" }, { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "AnnotationDbi", "role": "Imports" }, { "package": "BiocFileCache", "role": "Imports" }, { "package": "curl", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "progress", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "httptest2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "mockery", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "huber-group-embl", "_selfowned": true, "_usedby": 217, "_updates": [ { "week": "2025-39", "n": 7 }, { "week": "2025-40", "n": 6 }, { "week": "2025-43", "n": 1 }, { "week": "2025-44", "n": 3 }, { "week": "2026-03", "n": 3 }, { "week": "2026-07", "n": 2 }, { "week": "2026-08", "n": 2 }, { "week": "2026-09", "n": 1 }, { "week": "2026-11", "n": 13 }, { "week": "2026-14", "n": 1 }, { "week": "2026-15", "n": 6 }, { "week": "2026-18", "n": 2 }, { "week": "2026-27", "n": 1 }, { "week": "2026-34", "n": 32 }, { "week": "2026-38", "n": 7 }, { "week": "2026-39", "n": 7 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "2.69.3", "bioc": "3.24" }, { "branch": "release", "version": "2.68.0", "bioc": "3.23" } ], "_topics": [ "annotation", "bioconductor", "biomart", "ensembl" ], "_stars": 51, "_contributors": [ { "user": "grimbough", "count": 349, "uuid": 971237 }, { "user": "bisaloo", "count": 220, "uuid": 10783929 }, { "user": "dtenenba", "count": 23, "uuid": 2286826 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "jmacdon", "count": 6, "uuid": 5940924 }, { "user": "leyerds", "count": 5, "uuid": 134183214 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 } ], "_userbio": { "uuid": 57364287, "type": "organization", "name": "EMBL Huber Group", "followers": 20, "description": "Repository for joint projects by members and ex-members of the Huber group at EMBL. 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